An example dataset in iProX
Please refer to IPX0000812000 in iProX as an example dataset, which composed of the raw data and analysis results of a newly published paper (Feng X. et al. BMC Genomics. 2017; 18(Suppl 2):143.).
Two previously published datasets were used in this study to evaluate the entrapment sequence method in proteomics data analysis process. The Pfu dataset (IPX0000812001) was produced by analyzing Pyrococcus furiosus sample on LTQ Orbitrap Velos (Vaudel M, et al. A complex standard for protein identification, designed by evolution. J Proteome Res. 2012;11(10):5065–71.) and used as a standard dataset. The LM3 dataset (IPX0000812003) was generated from a shotgun analysis of the metastatic human hepatocellular carcinoma cell line (HCCLM3) using Q-Exactive (Wu S, et al. First proteomic exploration of protein-encoding genes on chromosome 1 in human liver, stomach, and colon. J Proteome Res. 2013;12(1):67–80)